Molecular dynamics with quantum transitions for proton transfer: Quantum treatment of hydrogen and donor–acceptor motions

نویسندگان

  • Soo Young Kim
  • Sharon Hammes-Schiffer
چکیده

The mixed quantum/classical molecular dynamics with quantum transitions ~MDQT! method is extended to treat the donor–acceptor vibrational motion as well as the hydrogen motion quantum mechanically for proton transfer reactions. The quantum treatment of both the hydrogen and the donor–acceptor motions requires the calculation of two-dimensional vibrational wave functions. The MDQT surface hopping method incorporates nonadiabatic transitions among these adiabatic vibrational states. This approach is applied to a model representing intramolecular proton transfer within a phenol-amine complex in liquid methyl chloride. For this model, the rates and kinetic isotope effects are the same within statistical uncertainty for simulations in which only the hydrogen motion is treated quantum mechanically and simulations in which both the hydrogen and the donor–acceptor vibrational motions are treated quantum mechanically. The analysis of these simulations elucidates the fundamental issues arising from a quantum mechanical treatment of the donor–acceptor vibrational motion as well as the hydrogen motion. This insight is relevant to future mixed quantum/classical molecular dynamics simulations of proton and hydride transfer reactions in solution and in enzymes. © 2003 American Institute of Physics. @DOI: 10.1063/1.1592509#

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Role of Hydrogen Transfer and Ionic Bonding on RR, SS and RS Medetomidine Conglomerates/Acids Stability: A Theoretical Study

This study focuses on RR, SS and RS medetomidine (MM) and inclusion of several achiral acids to distinguish which acid can help conglomerate formation instead of crystallizating racemic mixtures by defining the low-lying energy of their structures. Favorable orientation of acids was determined in interaction with the MM enantiomers after optimization. The most noticeable interactions include hy...

متن کامل

Mixed Quantum/Classical Dynamics of Hydrogen Transfer Reactions

This article presents the methodology we have developed for the simulation of hydrogen transfer reactions, including multiple proton transfer and proton-coupled electron transfer reactions. The central method discussed is molecular dynamics with quantum transitions (MDQT), which is a mixed quantum/classical surface hopping method that incorporates nonadiabatic transitions between the proton vib...

متن کامل

Proton-coupled electron transfer in soybean lipoxygenase: dynamical behavior and temperature dependence of kinetic isotope effects.

The dynamical behavior and the temperature dependence of the kinetic isotope effects (KIEs) are examined for the proton-coupled electron transfer reaction catalyzed by the enzyme soybean lipoxygenase. The calculations are based on a vibronically nonadiabatic formulation that includes the quantum mechanical effects of the active electrons and the transferring proton, as well as the motions of al...

متن کامل

Hydride transfer in liver alcohol dehydrogenase: quantum dynamics, kinetic isotope effects, and role of enzyme motion.

The quantum dynamics of the hydride transfer reaction catalyzed by liver alcohol dehydrogenase (LADH) are studied with real-time dynamical simulations including the motion of the entire solvated enzyme. The electronic quantum effects are incorporated with an empirical valence bond potential, and the nuclear quantum effects of the transferring hydrogen are incorporated with a mixed quantum/class...

متن کامل

Hydrogen tunneling in an enzyme active site: a quantum wavepacket dynamical perspective.

We study the hydrogen tunneling problem in a model system that represents the active site of the biological enzyme, soybean lipoxygenase-1. Toward this, we utilize quantum wavepacket dynamics performed on potential surfaces obtained by using hybrid density functional theory under the influence of a dynamical active site. The kinetic isotope effect is computed by using the transmission amplitude...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2003